Mountain pine beetle genome decoded

Mar. 26, 2013 ? The genome of the mountain pine beetle -- the insect that has devastated British Columbia's lodgepole pine forests -- has been decoded by researchers at the University of British Columbia and Canada's Michael Smith Genome Sciences Centre.

This is a first for the mountain pine beetle and only the second beetle genome ever sequenced. The first was the red flour beetle, a pest of stored grains. The genome is described in a study published Tuesday in the journal Genome Biology.

"We know a lot about what the beetles do," says Christopher Keeling, a research associate in Prof. Joerg Bohlmann's lab at the Michael Smith Laboratories. "But without the genome, we don't know exactly how they do it."

"Sequencing the mountain pine beetle genome provides new information that can be used to help manage the epidemic in the future."

The genome revealed large variation among individuals of the species -- about four times greater than the variation among humans.

"As the beetles' range expands and as they head into jack pine forests where the defensive compounds may be different, this variation could allow them to be more successful in new environments," says Keeling.

Researchers isolated genes that help detoxify defence compounds found under the bark of the tree -- where the beetles live. They also found genes that degrade plant cell walls, which allow the beetles to get nutrients from the tree.

Keeling, Bohlmann and their colleagues also uncovered a bacterial gene that has jumped into the mountain pine beetle genome. This gene codes for an enzyme that digests sugars.

"It might be used to digest woody tissue and/or the microorganisms that grow in the beetle's tunnels underneath the bark of the tree," said Keeling. "Gene transfers sometimes make organisms more successful in their environments."

This study involved researchers from the University of Northern British Columbia and the University of Alberta.

Characteristics of the mountain pine beetle genome

• 12 pairs of chromosomes
• Approximately 13,000 genes
• The mountain pine beetle separated from the red flour beetle -- the only other beetle genome sequenced to date -- about 230 million years ago. According to Keeling, "the two insects have about the same relatedness as a pine tree and a head of lettuce."
• The mountain pine beetle is closely related to other significant pests in North American forests such as the southern pine beetle, Douglas-fir beetle, eastern larch beetle, and spruce beetle. Insights gained from sequencing the mountain pine beetle genome can be transferred to these beetles, and other forest insect pests around the world.

Mountain pine beetle epidemic

The mountain pine beetle has infested over 18 million hectares of lodgepole pine in British Columbia -- an area more than five times larger than Vancouver Island -- causing enormous damage to the environment and forest industry. In recent years, the insect has moved further north and east, over the Canadian Rockies, and is now approaching the Alberta-Saskatchewan border. It is also beginning to infest other pine trees -- jack pine, a jack-lodgepole hybrid, limber pine, and the endangered whitebark pine. Jack pine boreal forests extend from Alberta to the Atlantic provinces. The mountain pine beetle also lives in Colorado, Wyoming, Arizona and South Dakota.

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Story Source:

The above story is reprinted from materials provided by University of British Columbia.

Note: Materials may be edited for content and length. For further information, please contact the source cited above.

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Journal Reference:

1. Christopher I Keeling, Macaire MS Yuen, Nancy Y Liao, T Roderick Docking, Simon K Chan, Greg A Taylor, Diana L Palmquist, Shaun D Jackman, Anh Nguyen, Maria Li, Hannah Henderson, Jasmine K Janes, Yongjun Zhao, Pawan Pandoh, Richard Moore, Felix AH Sperling, Dezene PW Huber, Inanc Birol, Stephen JM Jones, Joerg Bohlmann. Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest. Genome Biology, 2013; 14 (3): R27 DOI: 10.1186/gb-2013-14-3-r27

Note: If no author is given, the source is cited instead.

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Source: http://feeds.sciencedaily.com/~r/sciencedaily/most_popular/~3/6phY8FTccr8/130327093612.htm

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